Changing metabolite concentrations might influence transcription patterns of genes.Je erger et al. BMC Research Notes

Changing metabolite concentrations might influence transcription patterns of genes.Je erger et al. BMC Research Notes 2013, 6:482 http://www.biomedcentral.com/1756-0500/6/Page 5 ofTable 1 Genes with increased mRNA amounts in the wild-type compared to PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/26024392 glnR deletion strain MH1 in response to nitrogen starvationGene identifier msmeg_3358 msmeg_4965 msmeg_6507 msmeg_1792 msmeg_4567 msmeg_4382 msmeg_4011 msmeg_2116 msmeg_4570 msmeg_2187 msmeg_4569 msmeg_1292 msmeg_4171 msmeg_3994 msmeg_5648 msmeg_2189 msmeg_0393 msmeg_1153 msmeg_6659 msmeg_6332 msmeg_3626 msmeg_5083 msmeg_1152 msmeg_5331 msmeg_1151 msmeg_5783 msmeg_1155 msmeg_1157 msmeg_3912 msmeg_0565 msmeg_1184 msmeg_1156 msmeg_1185 msmeg_1089 msmeg_1088 msmeg_0505 msmeg_6880 msmeg_6879 msmeg_3722 msmeg_1596 msmeg_6264 msmeg_2523 msmeg_4381 Fold change 3.02 3.07 3.07 3.12 3.14 3.15 3.26 3.33 3.34 3.36 3.48 3.48 3.58 3.64 3.68 3.68 3.73 3.73 3.74 3.79 3.89 4.00 4.01 4.04 4.08 4.10 4.16 4.17 4.20 4.33 4.40 4.44 4.46 4.61 4.63 4.72 4.92 4.97 5.04 5.05 5.06 5.11 5.14 Annotation YaeQ protein Hypothetical protein Glycogen debranching enyme GlgX (glgX) Conserved hypothetical protein Conserved hypothetical protein Dehydrogenase-reductase SDR family member 10 Putative pyrimidine permease RutG PTS system, glucose-specific IIBC component Conserved hypothetical protein Urea amidolyase Conserved hypothetical protein FAD binding domain in molybdopterin dehydrogenase protein Ribose transport system permease protein RbsC Short chain dehydrogenase Hypothetical protein Allophanate hydrolase (atF) Fmt protein FAD dependent oxidoreductase Hypothetical protein Amino acid ABC transporter, permease protein Urease, beta subunit (ureB) Conserved hypothetical protein Citrate-proton symporter UDP-glucoronosyl and UDP-glucosyl transferase family DNA-binding protein Acetyltransferase, GNAT family Carnitinyl-CoA BX795 cost dehydratase Short chain dehydrogenase Acetoacetyl-CoA reductase Putative glycosyl transferases group 1 Serine esterase, cutinase family Dihydrodipicolinate synthetase Transcriptional regulator, AsnC family Hypothetical protein Glutamyl-tRNA(Gln)-aspartyl-tRNA(Asn) amidotransferase Probable sugar ABC transporter, substrate-binding protein Hydrophobic amino acid ABC transporter, putative Nat permease for neutral amino acids NatD Bifunctional coenyme PQQ synthesis protein C-D Transcriptional regulator Putative oxidoreductase Efflux ABC transporter, permease protein, putative AmidaseJe erger et al. BMC Research Notes 2013, 6:482 http://www.biomedcentral.com/1756-0500/6/Page 6 ofTable 1 Genes with increased mRNA amounts in the wild-type compared to glnR deletion strain MH1 in response to nitrogen starvation (Continued)msmeg_1090 msmeg_1508 msmeg_5729 msmeg_6733 msmeg_2748 msmeg_1085 msmeg_2569 msmeg_0429 msmeg_6878 msmeg_6263 msmeg_6262 msmeg_1295 msmeg_3402 msmeg_5356 msmeg_1296 msmeg_0780 msmeg_6877 msmeg_0566 msmeg_3403 msmeg_1990 msmeg_1086 msmeg_0778 msmeg_6261 msmeg_6660 msmeg_6817 msmeg_1052 msmeg_6259 msmeg_6881 msmeg_2185 msmeg_2525 msmeg_1293 msmeg_2978 msmeg_6260 msmeg_4206 msmeg_3400 msmeg_0572 msmeg_2427 msmeg_4637 msmeg_3401 msmeg_1988 msmeg_1597 msmeg_2979 msmeg_2981 msmeg_6115 5.24 5.54 5.75 6.32 6.36 6.41 6.61 6.64 6.97 7.01 7.40 7.42 7.82 8.15 8.73 8.79 8.90 8.94 9.26 9.45 9.94 10.22 10.36 10.75 11.34 11.63 11.67 11.75 12.81 14.19 14.73 15.78 16.11 16.44 17.66 17.72 18.22 18.43 18.68 18.75 18.80 18.88 19.17 19.21 Amidase Amino acid permease-associated region Hydantoin racemase Hydrolase, carbon-ni.